Scientific Engineering Associate

Lawrence Berkeley National Laboratory has multiple openings for a Scientific Engineering Associate in Berkeley CA.

Duties:

• Perform and supervise nonexempt staff in the development and application of mass spectrometry-related workflows in a high-throughput environment.

• Apply engineering scientific and technical concepts to develop and implement ESI-LC-MS/MS and other mass spectrometry-related workflows for analyzing microbial metabolites and secondary metabolite production in a high-throughput metabolomics environment.

• Perform oversee and expertly troubleshoot all aspects of LC-MS workflows including sample processing instrument setup operation and maintenance data quality control software workflows and coordination with service engineers.

• Develop optimize and standardize sample preparation and extraction methods for diverse environmental samples with particular emphasis on soil.

• Onboard new mass spectrometry instrumentation and protocols and integrate them into high-throughput production workflows.

• Monitor and ensure adherence to production metrics for high-throughput metabolomics workflows.

• Perform both standard and custom mass spectrometry data analysis.

• Prepare results summaries and conclusions for JGI users and other collaborators.

• Manage day-to-day laboratory operations including lab organization and setup instrument scheduling and prioritization sample workflows equipment maintenance purchasing and inventory of consumables freezer organization and waste management.

• Manage and ensure compliance with safety requirements for operating a metabolomics lab.

• Supervise and train technical staff including undergraduate students research assistants providing guidance on LC-MS/MS workflows data quality control laboratory procedures safety practices and general lab operations.

• Continuously improve and optimize laboratory processes to strengthen metabolomics platform operations including the development of new internal standard mixtures analytical methods and automation protocols.

• Collaborate closely with internal and external partners across JGI groups to customize experimental plans support cross-team and cross-group R&D projects and advance user-driven science.

• Contribute to the development maintenance and enhancement of metabolomics infrastructure and Laboratory Information Management systems (LIMS).

• Contribute to scientific works including the preparation and publication of peer-reviewed journal articles.

Requirements:

• Bachelors Degree in Analytical Chemistry Engineering Biochemistry Bioengineering or a related field and 3 years of experience in the job offered or in a related occupation.

• MS Instrumentation: Operating maintaining and troubleshooting Thermo Orbitrap ESI-LC-MS/MS mass spectrometry instrumentation such as IQ-X or Exploris mass spectrometers.

• Metabolomics sample processing equipment including UHPLC SpeedVacs lyophilizers centrifuges N2 generators on a daily basis.

• Onboarding: Onboarding new Thermo Orbitrap MS instrumentation and accessory equipment (N2 generators UHPLCs pumps etc) and implementing them into production in a high-throughput metabolomics environment running over >10k samples/year.

• Method development: Developing and optimizing new ESI-LC-MS/MS methods (MS settings mobile phases chromatography column etc) to target specific metabolite classes or metabolites such as sugars lipids pigment and implementing these in high-throughput metabolomics workflows as well as incorporating custom data acquisition software workflows (including AcQuireX for iterative MSMS) and similar technologies.

• High-throughput metabolomics production: Preparing and running metabolomics samples using standardized workflows and methods in a high-throughput production environment (>10k samples/year) using Thermo Orbitrap ESI-LC-MS/MS instrumentation in line with UHPLC while constantly maintaining instrument uptime fast turnaround and high data quality.

• Metabolite extraction: Performing metabolite extraction of thousands of samples/year using a variety of solvents as well as directly customizing protocols for diverse complex sample types including soil bacteria plant fungal environmental aqueous (including high salt diverse pH) samples optimizing solvents (methanol water ethyl acetate chloroform etc.) and methods.

• Performing day-to-day lab operations in a high-throughput production metabolomics lab environment with multiple mass spectrometers and sample extraction equipment including executing workflows chemical inventory equipment maintenance and rigorous lab safety practices involving flammable and toxic materials including storage use and disposal.

• Documentation: Maintaining precise and detailed laboratory records and documentation.

• Training/mentorship: Training and mentoring others (interns collaborators coworkers) in metabolomics sample extraction and solvent handling usage of processing equipment and running ESILC-MS/MS samples including instrument operation theory equipment set-up (mobile phase etc) maintenance and troubleshooting.

Additional Information:

• Appointment Type: This is a full-time career appointment exempt (monthly paid) from overtime pay.

• Salary Range: The full salary range of this position is between $88560 to $114828 per year depending upon candidates full skills knowledge and abilities including education certifications and years of experience.

• Union Represented: This position is represented by a union for collective bargaining purposes.

• Background Check: This position is subject to a background check. Any convictions will be evaluated to determine if they directly relate to the responsibilities and requirements of the position. Having a conviction history will not automatically disqualify an applicant from being considered for employment.

• Work Modality: This position will be performed onsite at Lawrence Berkeley National Lab located at 1 Cyclotron Road Berkeley CA 94720. Work schedules are dependent on business needs. A REAL ID or other acceptable form of identification is required to access Berkeley Lab sites (for more information click here).

• Relocation Assistance: This position is not eligible for relocation assistance.

• Work Authorization: Candidates must be eligible to work in the U.S. at the time of hire. Visa sponsorship is not available for this position.

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Equal Employment Opportunity Employer: The foundation of Berkeley Lab is our Stewardship Values: Team Science Service Trust Innovation and Respect; and we strive to build community with these shared values and commitments. Berkeley Lab is an Equal Opportunity Employer. We heartily welcome applications from all who could contribute to the Labs mission of leading scientific discovery excellence and support of our rich global community all qualified applicants will be considered for employment without regard to race color religion sex sexual orientation gender identity national origin disability age protected veteran status or other protected categories under State and Federal law.

Misconduct Disclosure Requirement: As a condition of employment the final candidate who accepts an offer of employment will be required to disclose if they have been subject to any final administrative or judicial decisions within the last seven years determining that they committed any misconduct; or have filed an appeal of a finding of substantiated misconduct with a previous employer. For additional information click here.