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Research Programmer III- Machine Learning & Computational Neuroscience, Kennedy Lab

Scripps Research


Job Location:

San Diego, CA - USA

Yearly Salary: USD 75000 - 100000
Posted: 29 September 2026 (2 days ago)
Application Deadline: 27 December 2026
Vacancies: 1 Vacancy

Job Summary

POSITION TITLE:Research Programmer III (Software Engineer)

POSITION SUMMARY:

The Kennedy laboratory is involved in numerous projects to track quantify and forecast individual and group behavior and relate it to recorded neural activity. We develop new computational methods to understand how agents (animals humans virtual) gather information about their sensory environment integrate this with internal motivational needs and execute goal-directed actions in complex naturalistic environments. We also develop machine learning and computer vision platforms for high-throughput animal phenotyping with the goal of accelerating drug screening and repurposing efforts at Scripps.

We seek motivated individuals interested in gaining hands-on experience in scientific research projects with a goal of contributing to scientific papers and participating in an active lab environment. You will also have the opportunity to lead independent research projects on existing datasets from our collaborators (U Penn UCLA Harvard U Utah Northwestern and others). This is an ideal position for applicants interested in building their scientific CV ahead of applying to graduate programs in Computational Neuroscience or Machine Learning or those looking for a longer term position where they can contribute to original scientific research and model development.

REQUIREMENTS:

  • Bachelors degree in Engineering Computer Science Data Science Applied Math or related field or an equivalent combination of education training and/or experience. Other STEM degrees may be accepted if accompanied with programming education training and/or experience.
  • Minimum of four years experience in software application development or research programming.
  • Experience with software development in Python.
  • Experience building and training deep neural networks for supervised unsupervised or reinforcement learning problems.
  • A demonstrated ability to apply the fundamentals of software application development.
  • Experience with version control including git and github.

Please include code samples and/or a link to a public code repository with examples of your work.

PREFERRED SKILLSET:

Prior experience with the one or more of the following is preferred:

  • Experience with sequence/time series data control/reinforcement learning problems and environments time series forecasting.
  • An understanding of generative modeling (hidden Markov models diffusion models etc).
  • Familiarity with topics in motor control robotics and neuroscience.

As a member of a computational lab working in team projects the following general skills are also preferred:

  • Experience developing scalable system architectures that adhere to good software engineering principles.
  • Ability to tackle large open-ended research questions independently and as part of a team.
  • Willingness to be an active participant in a computational lab environment including taking part in lab meetings journal clubs and hackathons.
  • Experience working within a diverse interdisciplinary team.
  • Experience contributing to open source software projects.

    LOCATION: La Jolla California.

    PHYSICAL REQUIREMENTS: This position works in an office environment and it is expected that work will be primarily performed in-person.

    COMPENSTAION:

    The expected hiring range for this position is $75000 to $100000 per year commensurate with experience.

    COMPREHENSIVE BENEFITS INCLUDE:

    • Employer Contributed Retirement Plan Depending on eligibility employees receive an employer contributed retirement plan (no employee contribution required) and the option to contribute to a 403(b) (which is similar to a 401(k) using your own pre or post-tax dollars)
    • Full Suite of Health and Welfare plans including three medical plan options (including an HSA available option) dental vision life insurance disability EAP and more
    • Access to Flexible Spending Accounts (Medical/Dependent Care)
    • Competitive vacation and sick leave policies
    • Free on-site parking

    The above statements describe the level of work performed and expected in general terms. The statements are not intended to list all the responsibilities duties and/or skills required of employees so classified and the content herein is subject to change due to the business needs of Scripps Research with or without notice. Furthermore nothing in this job description shall be interpreted to be in conflict with or to eliminate or modify in any way the employment-at-will status of Scripps Research staff.

    EEO Statement:
    The Scripps Research Institute is an Equal Opportunity Employer. We promote diversity of thought culture and background in the fields of science. All qualified applicants are encouraged to apply and will receive consideration for employment without regard to race color religion sex sexual orientation gender identity national origin disability protected veteran status or any other legally protected characteristic or status.


    Required Experience:

    IC


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