Bioinformatics Data Engineer

Bioinformatics Data Engineer

Love taking raw scientific data and turning it into something researchers can trust and use Come work with a team shaping lab research and genomics data for life sciences startups CROs and instrument developers doing work that matters.

About Yahara:

We help scientific organizations solve hard problems and move their industries forward from life sciences startups and CROs to the teams building lab software and scientific instruments. Its work were proud of and were excited about the successes still ahead.

Join a team recognized as one of Madison Magazines Best Places to Work where innovation thrives and collaboration drives success. We dont just build software. We empower people and transform industries.

Important Notes about this Position:

• This is a hybrid position based out of our office in Madison WI.
• We are unable to provide sponsorship.

The Opportunity:

Youll work on client projects where the data is the hard part: messy high-volume and scientifically complex. Youll clean it structure it and analyze it so scientists get answers faster. Youll set technical direction grow the engineers around you and be the person clients call when their data isnt telling them anything yet.

Our Approach:

We build on strong engineering fundamentals: solid methodology rigorous testing and sound architecture. We use AI tools like Claude and Codex where they speed up delivery while keeping critical thinking and engineering discipline at the center. We own the quality accuracy and understanding of the code we ship.

What Youll Do:

• Turn raw lab research and genomics data into clean analysis-ready datasets.
• Design data models that make scientific data easy to query and reuse.
• Build repeatable pipelines so analysis doesnt start from scratch every time.
• Apply statistical methods and exploratory analysis to find what the data is saying.
• Create visualizations that help researchers see results at a glance.
• Build data quality checks that catch problems before they reach a result.
• Partner with scientists to understand the biology behind the data.
• Own technical delivery for your project team: quality pace and direction.
• Mentor the engineers on your team through code reviews and one-on-one problem solving.
• Help engineers work through hard problems instead of solving them for them.
• Present results tradeoffs and risks to clients in plain language.
• Join pre-sales conversations with solution outlines and rough estimates.
• Document key decisions in ADRs so the next team knows why not just what.

What Youll Bring:

Experience:

• 6 years in data science data engineering or software engineering.
• Hands-on experience wrangling large messy datasets into usable form.
• A working knowledge of statistics and exploratory data analysis.
• Time leading technical work for a team formally or informally.

Mindset:

• Real curiosity about the science behind the data.
• Rigor about data quality reproducibility and traceability.
• Genuine interest in helping other engineers grow.
• Ability to explain findings to scientists and non-technical stakeholders alike.

Nice to Have:

• Experience with lab research genomics or bioinformatics data.
• Familiarity with LIMS ELNs or instrument data.
• Work in regulated environments (HIPAA FDA GxP 21 CFR Part 11).
• Machine learning applied to scientific data.
• Consulting or client-facing project experience.

Tech Like What Youll Use (examples not requirements; were stack agnostic):

• Python (pandas NumPy SciPy) and/or R
• Notebooks like Jupyter
• Workflow tools like Nextflow Snakemake and Airflow
• Relational and analytical databases (Postgres SQL Server Databricks or similar)
• Visualization tools like Plotly ggplot2 or Power BI
• Cloud platforms: Microsoft Azure and Amazon Web Services

Company Benefits & Perks

• 20 days of PTO accruable in the first year!
• Comprehensive health insurance (Medical Dental Vision) with HMO and PPO options
• Health Savings Account (HSA) with annual employer contributions
• 401(k) with guaranteed company match (Traditional and Roth options)
• 100% company-paid short-term and long-term disability
• 100% company-paid life insurance with option to increase coverage
• 100% company-paid identity theft protection
• On-site gym with basketball court
• Hybrid/remote schedule with home office stipend
• Fresh fruit healthy snacks and beverages provided daily
• Bonus certification program (Microsoft AWS PMP IIBA etc.)
• Employee Assistance Program (counseling legal financial services)
• Monthly and Quarterly Recognition Awards with spot bonuses
• Company-supported community outreach and volunteer opportunities
• Employee-run committee involvement opportunities
• Collaborative culture founded on realized values and incredible people

If you need an accommodation as part of the employment process please contact Human Resources via email at

Yahara Software LLC is an Equal Employment Opportunity/Affirmative Action Employer.

This is a full-time salaried position with competitive salary and benefits. Candidates must be eligible to work in the U.S. on a permanent basis and can work on-site in our office located in Madison Wisconsin.

Required Experience:

Senior IC